rs265148162 SNP Detail

Summary

• ID
  rs265148162
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:95242469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGCAGTTG GTGTAACTAA CACGTTTTGC
  CTGTTAGAAT GCACTCCTAT TTCTGAGGCA GGGTACCATA AAAGTAGCGC ACAAAGTCCT
  GATTGGATGT TTCACTTTTG CAAAACTTGC CAATTATGTT TCTTAGATGG TGCCCTTAAT
  M
  TATCCCAAAG TTAAATTGTC CTCAATTAAT TGGGCGCCAC ATCTCTGGAG AGGTGTCACA
  TAGAGGAAGA CCCCCAAGCA GAAGGGGCTA GCTAGCCAAG AGAACAACTG TGGTTTCCCT
  TTCCCTAAAA TGAGAGCAGA TGGTATTTTG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319848325	CHEV_1_97211321	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265148162					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:95242469 () rs orientation: forward

Symbol	Name	Function Class
Cpgi614	CpG island 614	368 bp distal
Fam174a	family with sequence similarity 174, member A	within coordinates
Rr396183	regulatory region 396183	1082 bp downstream
Rr416130	regulatory region 416130	1106 bp distal
Rr416131	regulatory region 416131	1244 bp proximal
Tssr8214	transcription start site region 8214	1067 bp downstream
Tssr8215	transcription start site region 8215	1040 bp downstream
Tssr8216	transcription start site region 8216	644 bp downstream
Tssr8217	transcription start site region 8217	622 bp downstream
Tssr8218	transcription start site region 8218	601 bp downstream
Tssr8219	transcription start site region 8219	583 bp downstream
Tssr13058	transcription start site region 13058	672 bp upstream