rs265158564 SNP Detail

Summary

• ID
  rs265158564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140688074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGGCAT GGTGGCACAC
  AGCTGTAATC CCAGCTCTCT GCAGTTCTTT ACCTGTAGGA AGATCTGAAG TTGGGGACAG
  TGGACAGCCT GTGGGTCCTT GGTGGACAGC CTATAAGCTA CATCACCCAT CTTTCCTATT
  GTCATCTTCC TTGGGGTTAG AGAGGAATTA GGTGAGCAGC TCGCTCACTT ACCACAGCAT
  Y
  CCAGAGGCTG GCACCAGCCA CATACTAGGT ACCCTTTCTG GCTGCTTTGG TTTTGGTTTT
  GTGTGTTTTG AGGCAGGGTC TCAAGTATCC CAGATGGACT CGACCTCATT AAGTAGCGGA
  GGGTGAGCTT GGTTCTCCTA CTGTCTCCAT ATGCCGGGCA TGCAACTTCT GTACCGACGT
  GACGTTCATC TTTTGATCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363508359	MGP_WTSI_4_140516678	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265158564					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363508359	MGP_WTSI_4_140516678	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140688074 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15201	CpG island 15201	346 bp proximal
Gm34431	predicted gene, 34431	within coordinates
Gm68270	predicted gene, 68270	within coordinates
Rr367768	regulatory region 367768	within coordinates
Rr603592	regulatory region 603592	within coordinates
Rr603593	regulatory region 603593	411 bp proximal
Rr603594	regulatory region 603594	467 bp proximal
Rr603595	regulatory region 603595	524 bp proximal
Rr603596	regulatory region 603596	1968 bp proximal
Sdhb	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	508 bp upstream
Tssr40003	transcription start site region 40003	519 bp upstream
Tssr40004	transcription start site region 40004	538 bp upstream
Tssr40005	transcription start site region 40005	609 bp upstream
Tssr40006	transcription start site region 40006	641 bp upstream