rs265193368 SNP Detail

Summary

• ID
  rs265193368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:115218941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGACGGAT GCATCAGTGT
  TTATTTCAGT TGACATGTAA CGTAATTTCC CCATGAAGGA AACAGCAGAT AGATTTAACA
  TTCTATAAGG CTTCCTTCTC ATCAAATTCC TCTCTGGCGA TGTGCAACTG GCACTTTAAG
  TATCACTCTT AACTCTCTGC AGCAGCCAGA AGGCTTTTTA TTATGTAAAT CTAACCGTGC
  Y
  CGTCTTTTCA TAGTCATGGG GCTTCTTCAA GTACTCTTGG AACAAAGTAG AAAACGCTTT
  AATATAGAAG ACCAAATCTC TGTCATCCTT TGGTGTCATC TGACATGTCA CCTCTTTTGT
  GAAGTGTCCT TTGACTTTCT GAGGCTAAAT TAGGTCTCTC TGAAAGTCTT TTCTGTGGCA
  CTCAACAGAA ATTATGCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484707	CHEV_10_114820092	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265193368					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115218941 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	999 bp proximal
Rr402239	regulatory region 402239	1692 bp upstream
Rr439213	regulatory region 439213	within coordinates
Rr439214	regulatory region 439214	1257 bp proximal
Rr439215	regulatory region 439215	1364 bp proximal
Rr439216	regulatory region 439216	1923 bp proximal
Thap2	THAP domain containing, apoptosis associated protein 2	Intron
Tssr95813	transcription start site region 95813	881 bp upstream
Tssr95814	transcription start site region 95814	1885 bp upstream
Tssr95815	transcription start site region 95815	1915 bp upstream
Tssr99330	transcription start site region 99330	1290 bp downstream
Tssr99331	transcription start site region 99331	1301 bp downstream
Tssr99332	transcription start site region 99332	1352 bp downstream
Tssr99333	transcription start site region 99333	1440 bp downstream
Tssr99334	transcription start site region 99334	1480 bp downstream
Tssr99335	transcription start site region 99335	1715 bp downstream
Zfc3h1	zinc finger, C3H1-type containing	1923 bp upstream