rs265200818 SNP Detail

Summary

• ID
  rs265200818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8618540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTCAAA AAAAAAAAAA
  AAAAAAAAAA AAGAACTTCA CAAAAAACAA CAACAAAAAA GTTTACTGTT TTATTTATTA
  TCTACAGAGT TGAAAAATTC TCAGTAGATA TCTGTACCAG CTAGCTGGCT AAAAGAATGT
  CATAACCCAT GTCAAGGATT TATTAAAATC TAGAGTGTTA AATCCATCAG GACATGGAAA
  Y
  TGAGGTTCCA GATTCATAAG TTCTTTATTC CTAATCTCTG TTATCAAAAC TGATCTATAG
  CTGCCATTTT ACCATCCTTT TCAGAACTAA GAATGAGGTT AACTAAGTAA AGTCGCTTAG
  AAGCACAGGG CAGCCTCTCT TGGAGATGGG AAAGTTCTAC AGCTTGCCAC AAATGAAGTA
  CCTGAAAAGT CTTATGACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321463558	CHEV_5_8568540	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265200818					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8618540 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	within coordinates
Rr130297	regulatory region 130297	940 bp distal
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	1430 bp downstream
Tssr45119	transcription start site region 45119	1417 bp downstream