rs265208435 SNP Detail

Summary

• ID
  rs265208435
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190713296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGGGGA AGAGCCCTGC
  CTAGGACTAG TTTCTGGCTG CTCAGCTCTA TGTGGGAGTT GGGATGGAAA CCTCTATGAG
  GCAGGCAGGG TGGGAGCCAG GATCAGTAGA GGATCAATGG AGGCAACCTG GGTTCTAAAC
  CTACCAGGAC AGAGCCCTGG GCATGAGACT ATGGATGGAG TCATCACTGA GCACAGTAAC
  S
  CCAGTCTATG TCAGAACATT CTTAACGGTC CTCGGGCAAC AAGCACACCT GGGAAAGAAT
  CAGGAGGGAG AAGACAATGT GTGCCCAGGG AATCTCGTTC CTAATTAAAA GGAAACCCAC
  CTGTTTGCTC ATCCCAAACG CCCTTCTCTC CTGTCTGCAG TTCATCCTTA AGTCCATCTC
  TCTCCCTTCC ACGTCCCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320194441	CHEV_1_192804978	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265208435					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190713296 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1214	CpG island 1214	1491 bp distal
Tssr15742	transcription start site region 15742	1945 bp upstream
Tssr15743	transcription start site region 15743	1921 bp upstream
Tssr15744	transcription start site region 15744	1909 bp upstream
Tssr15745	transcription start site region 15745	1867 bp upstream
Tssr15746	transcription start site region 15746	1827 bp upstream
Tssr15747	transcription start site region 15747	1797 bp upstream
Vash2	vasohibin 2	1803 bp upstream