rs265212070 SNP Detail

Summary

• ID
  rs265212070
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:57010191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGGCTC TGAGAATCCT
  CTAAGAGCGC TTTGGACGCG GGAGAAGCCT AGTCGCCACG AGTCCAGACG AGGTGGTGGT
  GGGGGACAGA GAGGAGTTAA GAAGAATGCG AAAGATGTAG GGAGTGCTCG GAGGGGTTGC
  CAGTGAAGGC TCCACCGCAC TTCCCGGCTT CGCCTAAGCG CGCGTGAGAG CCAGAGCCCC
  R
  GAACAGCCGG GGAACTTAGC GCGCCCAGGG CTTCCCGAAC TACAGGCGCC GCGTGGGAGC
  CCTCGCCCAG CGTACTTACT GCTCACGGTC TGTCTGAAAC TTGGCTGGCT GGGGCTCTGT
  CCATGGAGCA AAAGTAGAGA ATCCAGGGTG GAAAGTTTTT GGTGAATTGT AGTGTTGTCC
  TAGTCTTCCT TTCTCTTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349733841	MGP_WTSI_1_57027876	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265212070					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349733841	MGP_WTSI_1_57027876	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57010191 () rs orientation: forward

Symbol	Name	Function Class
9130024F11Rik	RIKEN cDNA 9130024F11 gene	437 bp upstream
Cpgi267	CpG island 267	1031 bp distal
Cpgi268	CpG island 268	within coordinates
Cpgi269	CpG island 269	430 bp proximal
Satb2	special AT-rich sequence binding protein 2	within coordinates
Tssr6736	transcription start site region 6736	419 bp upstream
Tssr6737	transcription start site region 6737	1001 bp upstream
Tssr6738	transcription start site region 6738	1148 bp upstream
Tssr6739	transcription start site region 6739	1523 bp upstream
Tssr11745	transcription start site region 11745	1182 bp upstream
Tssr11746	transcription start site region 11746	1157 bp upstream
Tssr11747	transcription start site region 11747	235 bp downstream
Tssr11748	transcription start site region 11748	249 bp downstream
Tssr11749	transcription start site region 11749	281 bp downstream
Tssr11750	transcription start site region 11750	306 bp downstream
Tssr11751	transcription start site region 11751	662 bp downstream
Tssr11752	transcription start site region 11752	680 bp downstream
Tssr11753	transcription start site region 11753	718 bp downstream
Tssr11754	transcription start site region 11754	730 bp downstream
Tssr11755	transcription start site region 11755	1151 bp downstream
Tssr11756	transcription start site region 11756	1200 bp downstream
Tssr11757	transcription start site region 11757	1405 bp downstream