rs265231249 SNP Detail

Summary

• ID
  rs265231249
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90788434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCACCACA GCATCAGAAG
  AGGTCCTTCC AGAAATGTGT GTCATTAACC ACAGCTGCTC ATAAAGGCAC CCTGGGGGGG
  TGTGGGTACT AACACCCCCA CCTGTGTGCT TGTGCTTTCA AACTTCTTAA AGAGGAGCTG
  CTTTTCCCAC TCTCATATCA CAGACGAGTA AACTGAAGCT GTGATTGAGA ACTGTCCACC
  S
  TGTGTGCACT CTGCTCTAAA GGCCCCATCC TGGGCTGCTT CTTGTCCTCC TTTTGGACCC
  ATGACATCCA TTGTATGCCT GTCTCTTTTC TGGCTGCTCT TCCAGAGAGG CACACACATC
  TTGATCCTGC TGTATTTTAA AGAAGAGTGA GTGATAAAGA CCTCCACACT CAAAAACAGC
  TGCCAAAGCT TTCAGGCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369171243	MGP_WTSI_6_90761446	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	G	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265231249					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	G	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369171243	MGP_WTSI_6_90761446	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90788434 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17728	CpG island 17728	1096 bp distal
Iqsec1	IQ motif and Sec7 domain 1	within coordinates
Rr634330	regulatory region 634330	1340 bp distal
Rr634331	regulatory region 634331	839 bp distal
Rr634332	regulatory region 634332	1220 bp distal
Rr634333	regulatory region 634333	769 bp proximal
Tssr62052	transcription start site region 62052	1379 bp upstream
Tssr62053	transcription start site region 62053	1358 bp upstream
Tssr62054	transcription start site region 62054	1292 bp upstream
Tssr62055	transcription start site region 62055	1233 bp upstream