rs265254519 SNP Detail

Summary

• ID
  rs265254519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115627498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCGGTCC CATAATGCTT
  TGCTTCATTT CCGCTGCTTA AATCTTAAAT AAAACCAGCA CGCCTCTCCG TTCTATCACA
  TAGAGAATGC CAAGAGAATG TCCTTGCTGC TCTCATTTCC AGGGTAGCGA TAATGGAGGG
  TTTTCCCGTT TGCTCGAAAC CCCCTTTTTG AAATAGGGTC CTCGTCTGCT AGGAACGTTG
  Y
  GCTGGGGCGG GAGTTCTTTA GCTTTGCGCA GTGGCAGTAT CGTAGCCAAT GAGGTTTATC
  CGAGGCGCGA TTATTGCTAA TTGAAAACTT TTCCCAATAC CCCGCCGTGA CGACTTGCAA
  TATAGTCGGC ATTGGCAATT TTTGACAGTC TCTACGGAGA CTGAATAATT GTGGTTTAAA
  AAAAGCATGC TACTTTTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366357733	MGP_WTSI_5_115939448	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265254519					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366357733	MGP_WTSI_5_115939448	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115627498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16375	CpG island 16375	382 bp proximal
Gm24265	predicted gene, 24265	20 bp upstream
Gm24407	predicted gene, 24407	815 bp upstream
Gm57305	predicted gene, 57305	194 bp downstream
Rr1425	regulatory region 1425	within coordinates
Rr108333	regulatory region 108333	1098 bp distal
Rr124163	regulatory region 124163	within coordinates
Tssr48292	transcription start site region 48292	117 bp downstream
Tssr48293	transcription start site region 48293	17 bp upstream
Tssr48294	transcription start site region 48294	92 bp upstream
Tssr48295	transcription start site region 48295	792 bp upstream
Tssr48296	transcription start site region 48296	887 bp upstream
Tssr52808	transcription start site region 52808	507 bp upstream
Tssr52809	transcription start site region 52809	490 bp upstream
Tssr52810	transcription start site region 52810	114 bp downstream
Tssr52811	transcription start site region 52811	391 bp downstream
Tssr52812	transcription start site region 52812	504 bp downstream
Tssr52813	transcription start site region 52813	516 bp downstream
Tssr52814	transcription start site region 52814	552 bp downstream
Tssr52815	transcription start site region 52815	746 bp downstream
Tssr52816	transcription start site region 52816	905 bp downstream