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rs265268273 SNP Detail
Summary
  • ID
    rs265268273
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr13:98829882 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AACTTTCCAC TTCCTGTTTA
    AGACTCCAGC AACTTTTCAT TTCCCACTCT ATTGTAAGGC TCCCTCAGCA CATGATCCAA
    TGTCAGCAGT TTCGATAAAA CAAAAAGATG GTTCGAAAAG ACAGTGGGTT TGTGGACTTT
    TACTTTAATT CTGTCAAAAT GTGATCCTTG TGGTTTCAAG AAGCAAACCC CGAGGCTGCC
    Y
    GGACACCCCG CCCCTACTGG CAGCTCAGTT TCAGGACACT GGCATGACCT GAGAGGATCT
    GACCCAACAG GTGACGTCTA GCCCCATCGC CAAGGCGGAC AGTGTCCTCA GGTAGGCGGA
    CAGGTGGCAA GTGGCCGTCA GGCACCCTCC TCCACAGTGC CACCTACTTC CACAGAGGCC
    TAGACACAGT AAACAGAGAG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss389656815 MGP_WTSI_13_99463329 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265268273 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss389656815 MGP_WTSI_13_99463329 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:98829882 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi6012 CpG island 6012 1324 bp proximal
Rr281821 regulatory region 281821 within coordinates
Tmem171 transmembrane protein 171 within coordinates
Tssr120815 transcription start site region 120815 1052 bp downstream
Tssr123632 transcription start site region 123632 1189 bp upstream
Tssr123633 transcription start site region 123633 1157 bp upstream
Tssr123634 transcription start site region 123634 649 bp upstream
Tssr123635 transcription start site region 123635 640 bp upstream
Tssr123636 transcription start site region 123636 587 bp upstream
Tssr123637 transcription start site region 123637 567 bp upstream
Tssr123638 transcription start site region 123638 229 bp upstream
Tssr123639 transcription start site region 123639 1395 bp downstream
Tssr123640 transcription start site region 123640 1432 bp downstream
Tssr123641 transcription start site region 123641 1451 bp downstream
Tssr123642 transcription start site region 123642 1519 bp downstream
Tssr123643 transcription start site region 123643 1650 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory