rs265276350 SNP Detail

Summary

• ID
  rs265276350
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107148927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAGCAG CAAGTGGGAC
  ACACAACCTG TGGTATTATT CAAACAGATT CAACCACGAT GCCATTTTTC TCAAAGCATT
  TTGTAAAAAT GGGGTTCTCG CCTGCAGACG TCAGCAGCCA TCCGTGAACA GTGAGAGGAA
  GGTCCCTGTG GACCTGGACC TCGGGCCTAG AGCCAGAGCC CCACAGGCAG ACACACTGAC
  W
  TCTGAACCAG ACTTCTCGCT GGCGTCATGA CTTTGGGAAT ATTGCTAATC CTCAGAGCCC
  CAGTGTTCTA AGGGCCTCCA GATCCCACCA CCCTCCATAG CTCCTTCCCA GAACACACAA
  TTACCACGAG GAAACTGTAA CCAGGAAATC TTATAAAGCA GTGGTATTGG CTGAACGAGT
  CTCCTTCCTC TTAGCTGCCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864902	CHEV_3_107044529	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265276350					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107148927 () rs orientation: forward

Symbol	Name	Function Class
Gm66085	predicted gene, 66085	255 bp upstream
Prok1	prokineticin 1	1904 bp upstream
Rr582947	regulatory region 582947	within coordinates
Rr582948	regulatory region 582948	266 bp proximal
Tssr31192	transcription start site region 31192	178 bp upstream
Tssr31193	transcription start site region 31193	249 bp upstream
Tssr31194	transcription start site region 31194	304 bp upstream