rs265278180 SNP Detail

Summary

• ID
  rs265278180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:9881004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAGCGAG AGGAAGGGGG
  GGAGATCAAG AGAGATGGAG AATTCTCTTG AACGCCAAGG GTTAAGGTTC TTTTTTTTTT
  TTATGCAGGA AGTTGTATAG TAAATAACAT TAGGTCTGAT CTACCTCATT TCCACTTAAC
  TGCTAATCTG CACACAACCC AAGCAAAGAG CGCCCCATCC GCAGAAATGT CTGTTTGAAA
  Y
  GTCTGTTTGA AACCTGGCGG CTCTAGGGTA GAGGATGCCT GCTGGCCAAA GGGGCTATGT
  CATAGGCGCC AAGGCTAACT CTGAGAAGGG AGACCTGAGC AGATCTCAGG TCTGAGCTAG
  CTAAGAAAAA CCTCCCACCT TCTTTCCTTA AAATAAAAAA AAAAAAAAAC AAACAATGTA
  TTTTTGCTGG TTTAGGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353055986	MGP_WTSI_2_9797820	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265278180					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353055986	MGP_WTSI_2_9797820	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9881004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11182	CpG island 11182	1077 bp distal
Cpgi11183	CpG island 11183	783 bp proximal
Cpgi11184	CpG island 11184	1869 bp proximal
Gata3	GATA binding protein 3	Intron
Gm13256	predicted gene 13256	1063 bp upstream
Rr551592	regulatory region 551592	573 bp proximal
Tssr16061	transcription start site region 16061	56 bp downstream
Tssr22553	transcription start site region 22553	789 bp upstream
Tssr22554	transcription start site region 22554	1250 bp downstream
Tssr22555	transcription start site region 22555	1643 bp downstream
Tssr22556	transcription start site region 22556	1691 bp downstream
Tssr22557	transcription start site region 22557	1793 bp downstream
Tssr22558	transcription start site region 22558	1962 bp downstream