rs265281743 SNP Detail

Summary

• ID
  rs265281743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178232238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGATAAGG GGCAGGCAAT
  GCTCAGGGTC ACCTTCCATC AGGAAGGGAC AGTTCTCTTC CTTCCCATAC TTGCTACAAA
  GTCCTTCATC TTCAGGGAGA GTAAGGGGAA CACACAGAAT GTAAATATTA ATATAAAATA
  AATAAAATAT TAATATAAAA TAAATAAAAT ATTAATATAA ATTACTCTTC CATATTTTGG
  R
  GTGATTAATT TACTGTATGC TTGAGTTCAT CTTGGAAGTC TTTCTTTTCT TTCTTTTCCT
  TTCTTTCTTT CTCTTTCTTT TTGTTTTATT GTTTTGTTTT TGTTTTTGTT TTTGTTTTTT
  TGAGACAGGG TTTCTCTGTG TAGCCCTGGC TGTCCTGGAA CTCACTCTGT AGACCAGGCT
  GGCCTCGAAC TCAGAAATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352536880	MGP_WTSI_1_180334804	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265281743					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352536880	MGP_WTSI_1_180334804	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178232238 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1092	CpG island 1092	954 bp proximal
Efcab2	EF-hand calcium binding domain 2	1412 bp upstream
Gm70920	predicted gene, 70920	1237 bp downstream
Gm70923	predicted gene, 70923	1816 bp upstream
Rr29069	regulatory region 29069	562 bp proximal
Rr372517	regulatory region 372517	548 bp upstream
Tssr10392	transcription start site region 10392	1344 bp upstream
Tssr10393	transcription start site region 10393	1358 bp upstream
Tssr10394	transcription start site region 10394	1365 bp upstream
Tssr10395	transcription start site region 10395	1379 bp upstream
Tssr10396	transcription start site region 10396	1399 bp upstream
Tssr10397	transcription start site region 10397	1822 bp upstream
Tssr15493	transcription start site region 15493	1742 bp downstream