rs265284036 SNP Detail

Summary

• ID
  rs265284036
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:53747780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCGAGGAG GCGTCTCCTC
  TAGGCCTGTG AGACGCTCGC ATTTTCCCAG GACCCCTCCT CCCGGCCCCG GGGCCCCGCC
  TCCTGACCCC TCCAGTCCCG GTCCCCGTAG TAATGCCCTC CGGTTTTCCT CAGTCTCCAC
  GTACGTCCCC GAGGGCGCGT CCCAAAACCC GGATAACCGG AGCGCTCCCC ATGGACTACT
  Y
  GGAGGGCTTG TCCGCGGAGG AGCGGCCTGC GCATGCTCCA TCGGCGGGGT AGGTTTCTAG
  GGAAAGGCAG TGAGCAGATC CCTTAGTCCG CGGGCGGCGC GAGGCGGCTG GCTCCCGGCG
  GCGGCGGCGG CGAAGCGGGG AAAGACGGCG CGGGGGCCGG GTGGCAGCGA TCGGCGAGGC
  CGAGGGAAGG GGCGGGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364963856	MGP_WTSI_5_53981677	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265284036					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364963856	MGP_WTSI_5_53981677	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53747780 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15869	CpG island 15869			within coordinates
Rbpj	recombination signal binding protein for immunoglobulin kappa J region			Coding-NonSynonymous
				Intron
				mRNA-UTR
Rr367840	regulatory region 367840			1352 bp downstream
Rr611644	regulatory region 611644			1715 bp distal
Rr611645	regulatory region 611645			1068 bp distal
Rr611646	regulatory region 611646			within coordinates
Rr611647	regulatory region 611647			53 bp proximal
Rr611648	regulatory region 611648			554 bp proximal
Rr611649	regulatory region 611649			1052 bp proximal
Rr611650	regulatory region 611650			1470 bp proximal
Tssr46224	transcription start site region 46224			1671 bp downstream
Tssr46225	transcription start site region 46225			1473 bp downstream
Tssr46226	transcription start site region 46226			994 bp downstream
Tssr46227	transcription start site region 46227			87 bp downstream
Tssr46228	transcription start site region 46228			61 bp downstream
Tssr46229	transcription start site region 46229			5 bp downstream
Tssr46230	transcription start site region 46230			15 bp upstream
Tssr46231	transcription start site region 46231			218 bp upstream
Tssr46232	transcription start site region 46232			235 bp upstream
Tssr46233	transcription start site region 46233			283 bp upstream
Tssr46234	transcription start site region 46234			621 bp upstream
Tssr46235	transcription start site region 46235			795 bp upstream
Tssr46236	transcription start site region 46236			810 bp upstream
Tssr46237	transcription start site region 46237			962 bp upstream
Tssr46238	transcription start site region 46238			1028 bp upstream
Tssr46239	transcription start site region 46239			1091 bp upstream
Tssr46240	transcription start site region 46240			1158 bp upstream
Tssr46241	transcription start site region 46241			1479 bp upstream
Tssr51023	transcription start site region 51023			1173 bp upstream
Tssr51024	transcription start site region 51024			246 bp upstream
Tssr51025	transcription start site region 51025			134 bp downstream