rs265289041 SNP Detail

Summary

• ID
  rs265289041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117583236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACTCGAT CTCAATATTC
  ACTTTTATTC ACACTGTTAC AATATGAGAG TGGTATTTCT CATCTGCAAA CGTCAAATAC
  CAACTCAAAG TCTGTCCACA CTGATTGAAA ACGTGGACCC CCCACTTTTA CAATGTTACA
  GGGATTAAAT AGAGCAGACT TGGAAGTCTC TACAGAGCTA AGGATGACAC AGAACGGATC
  Y
  CCCTGCTTCC ACCCATTGAA GTGTCACATG CCTTGCAACT AATGTGTAGT TTTAAGTTTT
  GGACACTATT TCATAGGTTT TTATGATCTG TTTGCTTATG TCTCTGCCCG TTTTCTCCAG
  GATACCGTTT TTTTCTAATT GGCACTGAAA AGAAGGTCTT TGCATCAGAG GCACAAGAGA
  CTCTTTGATG AATTTTCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499188	CHEV_10_117184387	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265289041					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117583236 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2238	CpG island 2238	1546 bp distal
Cpgi2239	CpG island 2239	676 bp distal
Gm66856	predicted gene, 66856	within coordinates
Rr439610	regulatory region 439610	1368 bp distal
Rr439611	regulatory region 439611	840 bp distal
Rr439612	regulatory region 439612	490 bp distal
Slc35e3	solute carrier family 35, member E3	973 bp upstream
Tssr99471	transcription start site region 99471	981 bp upstream
Tssr99472	transcription start site region 99472	913 bp upstream