rs265290680 SNP Detail

Summary

• ID
  rs265290680
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:86930836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTTCGG GACGAGGACA
  CCTGCGCCGC CGACATGATG CCAGCCTCGG GGAAGGTAGG CCCCCGCCCG GGCTGTTTCC
  GAGGCGCCTT CTCCTACGGG AGGACTAGCT GGCTGGGGAA GAAGTCCAGC TGCGGGGGAG
  GGGGGCGGAG GGGAGCGAGA AAGTTCTGCC CCTGGGGCAG GAGAGAGCGC GAGTCTCCAC
  W
  GCCGGCGCAG CAGTGCCTCT CTCTCGGCGG GGGCTCCACC ACCCAGGCGG CCGACGGGTT
  CCGCACGCTC CTCGCCCCCA CCTCCTACTG CGGCTGTCTG GTCCAGAGAA GAGCACCGGG
  AGCCTTCTTC CTGGTGCGGC GGATCAGGGC TGCGAGCTCC GGGTCTGGGG GGAGGGGGCT
  ACGGTGTCCG GGGCCGGCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386770232	MGP_WTSI_12_88225012	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265290680					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386770232	MGP_WTSI_12_88225012	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:86930836 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4926	CpG island 4926	within coordinates
Irf2bpl	interferon regulatory factor 2 binding protein-like	within coordinates
Rr387576	regulatory region 387576	within coordinates
Rr470235	regulatory region 470235	313 bp proximal
Rr470236	regulatory region 470236	726 bp proximal
Tssr3903	transcription start site region 3903	8 bp downstream
Tssr117130	transcription start site region 117130	135 bp upstream
Tssr117131	transcription start site region 117131	28 bp upstream
Tssr117132	transcription start site region 117132	339 bp downstream
Tssr117133	transcription start site region 117133	404 bp downstream
Tssr117134	transcription start site region 117134	641 bp downstream
Tssr117135	transcription start site region 117135	654 bp downstream
Tssr117136	transcription start site region 117136	694 bp downstream
Tssr117137	transcription start site region 117137	746 bp downstream
Tssr117138	transcription start site region 117138	784 bp downstream
Tssr117139	transcription start site region 117139	1798 bp downstream