rs265299728 SNP Detail

Summary

• ID
  rs265299728
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48715949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAAAACC CAGAGAAGAT
  GTGGCAAAGA GTGAAAAGAT CCTAAATTCG TTTTGAGAAT TATCTAGGAG TCCCTCTGCT
  TACATTTTCT TTTTTTCTTT TGGGCTTATT AGAAGTGTGT CTCTCCATCC CCTTATCCCG
  GGCTCTGGAC TGCCAGGATA TTCACAGCTC TCCCTCCAGC TGACCTATTT AGCTCACACT
  K
  GAACTTTGGG ACCTCAAGAT CCCATCACTC ACCCAGTTAA CTAATATAAG GCAGTTTTCA
  GTGATCTTCC ATGTGGAGAC AGGAACTAAG TTGATAGATA GGAAATAAAC ATAGCTAACA
  CCATCAATCC CCTGGGATGC CCAACAGCAC TCACAGGTAG CTGTCACTTT TGAGTCATTT
  GTCTTTTAAA TGACAATACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323664658	CHEV_11_48638624	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265299728					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48715949 () rs orientation: forward

Symbol	Name	Function Class
Cdk2ap1rt	cyclin dependent kinase 2 associated protein 1 retrotransposed	224 bp downstream
Cpgi2781	CpG island 2781	383 bp distal
Cpgi2782	CpG island 2782	933 bp proximal
Gm74096	predicted gene, 74096	within coordinates
n-TGacc1	nuclear encoded tRNA glycine 1 (anticodon ACC)	1321 bp downstream
Rr446122	regulatory region 446122	246 bp distal
Rr446123	regulatory region 446123	533 bp proximal
Rr446124	regulatory region 446124	1523 bp proximal
Trim7	tripartite motif-containing 7	1016 bp upstream
Tssr107641	transcription start site region 107641	1179 bp downstream
Tssr107642	transcription start site region 107642	1602 bp downstream