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rs265309591 SNP Detail
Summary
  • ID
    rs265309591
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr19:44383279 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATGGCAGTGG GTAGGTAGTC
TTGCACTTTG ACTGGTCATA TCTGTCAGTC TCTGGGAAGA GCAATGTAGA CTAAACGATG
GTCTCAGGAA CATATATAGT TCTTTGGGAG TCTGTATGAA TACCTCTGCT GAGGATCCCC
AAATACTTGG TTTTTAAAAA AAGCTCTAAT CACCTCAGAA CTGCCCTTGA AGTAGTAGGT
M
AGTATTAATA ACCCTTTTTT GTCAGCACTC TCCCAGAGTG TCCTCCTGAG CTGATGCTAT
GGACACTTAA TTCACACTGT TGAGATGTGA GACTGTCAGA TACTTAGCCC AGGAGTTTCT
TGGGTTGATT AAAGGCTTTA TCTCTGGGGT GGGTTTGTTA CAAGAGAAAG GATAACATAG
CAATTCAGTG GCTAAGAGGC                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402552071 MGP_WTSI_19_44469330 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265309591 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss402552071 MGP_WTSI_19_44469330 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44383279 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr548236 regulatory region 548236 372 bp distal
Rr548237 regulatory region 548237 within coordinates
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 1519 bp downstream
Tssr156606 transcription start site region 156606 1568 bp upstream
Tssr156607 transcription start site region 156607 1892 bp upstream
Tssr159446 transcription start site region 159446 247 bp upstream
Tssr159447 transcription start site region 159447 72 bp upstream
Tssr159448 transcription start site region 159448 46 bp upstream
Tssr159449 transcription start site region 159449 3 bp downstream
Tssr159450 transcription start site region 159450 30 bp downstream
Tssr159451 transcription start site region 159451 102 bp downstream
Tssr159452 transcription start site region 159452 392 bp downstream
Tssr159453 transcription start site region 159453 451 bp downstream
Tssr159454 transcription start site region 159454 483 bp downstream
Tssr159455 transcription start site region 159455 776 bp downstream
Tssr159456 transcription start site region 159456 898 bp downstream
Tssr159457 transcription start site region 159457 942 bp downstream
Tssr159458 transcription start site region 159458 972 bp downstream
Tssr159459 transcription start site region 159459 1062 bp downstream
Tssr159460 transcription start site region 159460 1099 bp downstream
Tssr159461 transcription start site region 159461 1158 bp downstream
Tssr159462 transcription start site region 159462 1186 bp downstream
Tssr159463 transcription start site region 159463 1232 bp downstream
Tssr159464 transcription start site region 159464 1255 bp downstream
Tssr159465 transcription start site region 159465 1279 bp downstream
Tssr159466 transcription start site region 159466 1300 bp downstream
Tssr159467 transcription start site region 159467 1353 bp downstream
Tssr159468 transcription start site region 159468 1601 bp downstream
Tssr159469 transcription start site region 159469 1671 bp downstream
Tssr159470 transcription start site region 159470 1688 bp downstream
Tssr159471 transcription start site region 159471 1705 bp downstream
Tssr159472 transcription start site region 159472 1741 bp downstream
Tssr159473 transcription start site region 159473 1760 bp downstream
Tssr159474 transcription start site region 159474 1785 bp downstream
Tssr159475 transcription start site region 159475 1830 bp downstream
Tssr159476 transcription start site region 159476 1848 bp downstream
Tssr159477 transcription start site region 159477 1868 bp downstream
Tssr159478 transcription start site region 159478 1878 bp downstream
Tssr159479 transcription start site region 159479 1902 bp downstream
Tssr159480 transcription start site region 159480 1930 bp downstream
Tssr159481 transcription start site region 159481 1979 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory