rs265311091 SNP Detail

Summary

• ID
  rs265311091
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94967616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGAGCACC CCACACCCTA
  GATGGTCCCG GCCGCGCCCC CTTGGAGGTG TTAGCTCTTT GGACCTCGGC TAGGTGGAGG
  ATTTAGAACG GCAAGCCCTC GATCACCAGG AGGGCAGGAG GGAGGGATCC TCCCCAGCGC
  GCCCCGCCTC CCCACCGCCC AGCCCCGCAC CTCCCCACCT TGCGCGCCCA GTCCGGGCTC
  Y
  GCTTTCCTTC CGGGGAAAGA GAAAAGGTCC CCGCTCGGCC GCCGCCTCTT AAAGGGGCAG
  CGCCGCCCCT CCCTCTCCAT CTCTCCTATC GCGACTCCGC CCTCTCTCTC AGACACCTGT
  CGGGAACCCT TAAAGCCCGG ATTTCCCCTT CCAGCGGAGA GCTTCTTCCT AGGAGCGTCG
  CCTTCGGTAC AAGACGGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323817653	CHEV_11_94938104	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265311091					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94967616 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	within coordinates
Gm53645	predicted gene, 53645	within coordinates
Gm57362	predicted gene, 57362	within coordinates
Itga3	integrin alpha 3	within coordinates
Rr454943	regulatory region 454943	1853 bp distal
Rr454944	regulatory region 454944	1134 bp distal
Rr454945	regulatory region 454945	352 bp distal
Rr454946	regulatory region 454946	616 bp distal
Rr454947	regulatory region 454947	350 bp distal
Rr454948	regulatory region 454948	87 bp distal
Rr454949	regulatory region 454949	within coordinates
Rr454950	regulatory region 454950	182 bp proximal
Rr454951	regulatory region 454951	846 bp proximal
Rr454952	regulatory region 454952	1350 bp proximal
Tssr3652	transcription start site region 3652	174 bp upstream
Tssr104346	transcription start site region 104346	155 bp upstream
Tssr110254	transcription start site region 110254	201 bp upstream
Tssr110255	transcription start site region 110255	135 bp upstream
Tssr110256	transcription start site region 110256	68 bp upstream
Tssr110257	transcription start site region 110257	13 bp downstream