rs265324336 SNP Detail

Summary

• ID
  rs265324336
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84467196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGACAAG TCCCAAGGAG
  ATTCTCTGCC TGTTCCTGGC ACGGAGACAG CAGGGGACAG ACTGGGGCAG GGGGAGTTCC
  CACCCTCGAA GAAATGGGCA CCCTCACGTG GGTTTCTCTT CACATTGAGA GCGTCTGTTT
  GGGCAACAGT TTGCAAAGTG TACTTTAACC TACAGTTCTT TTTAGCTTTT TTTTTTTTTA
  W
  ACTGTATGTG TTTTGCCTGC ATGTATGTTT GTGCACTGCA TGTATTATTG TACACTGCAT
  GTATGTCTGT GCACTGCATG TCTGTTGCCC GTGGATGCAG AAGACAGTGT GAATCCCCAG
  GAACTGGAGT TACAGACACT TGTGAGCCAC CATATAGGTG CTGGGACCCA GCCAGGTCCT
  CTCTTAATGC TCTTGACCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375384462	MGP_WTSI_8_86264466	EVA_MGPV3	EVA_MGPV3	f	SNP	T	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265324336					SNP	T	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375384462	MGP_WTSI_8_86264466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84467196 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	within coordinates
Cpgi20655	CpG island 20655	311 bp proximal
Gm46046	predicted gene, 46046	719 bp upstream
Rr368559	regulatory region 368559	429 bp downstream
Rr666301	regulatory region 666301	592 bp proximal
Rr666302	regulatory region 666302	749 bp proximal
Rr666303	regulatory region 666303	803 bp proximal
Rr666304	regulatory region 666304	1649 bp proximal
Tssr2618	transcription start site region 2618	454 bp upstream
Tssr2619	transcription start site region 2619	166 bp downstream
Tssr2620	transcription start site region 2620	709 bp upstream
Tssr2621	transcription start site region 2621	1988 bp upstream
Tssr78291	transcription start site region 78291	211 bp downstream
Tssr78292	transcription start site region 78292	189 bp downstream
Tssr78293	transcription start site region 78293	48 bp downstream
Tssr78294	transcription start site region 78294	within coordinates
Tssr78295	transcription start site region 78295	48 bp upstream
Tssr78296	transcription start site region 78296	68 bp upstream
Tssr78297	transcription start site region 78297	821 bp upstream
Tssr82049	transcription start site region 82049	497 bp upstream
Tssr82050	transcription start site region 82050	409 bp upstream
Tssr82051	transcription start site region 82051	135 bp upstream
Tssr82052	transcription start site region 82052	606 bp downstream