GAAGGGAGAC CAGGCTGAAA GAGGAGCAGA GGGAAGGGAC GCTAAGGGGG AAGCACACCA AATCCATTAG TACTATATAT ATATAGAGAT ACTCGTATAT ACTGCGTTTC TTAGCCTAAG AAGAAACTTG TTTGACGGGA CGGGCGGCCT TTGCGGTCCG CGATGCTGGT GCTGATGGGG CGCACGGATC TCCCAAGAGG R GCCAAAGCAG GGGTTGGCCC CAGCTGGCTT GCGCAGAGTG GGACGCCCCG AGGGTGGATG GGGTGGGAGG GAGCAGAGGT GGGGCTGGGG TGCCCCTAGG GCTCTCGATT GGGGGACAAA GTTCTCATAA CTTTATTGCT CCTTTTTTTT TTCTCTCGTG GGGGGTCCGT TCAGTACGGT CGGGTTGGGG GAAACGGTGG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss375404559 | MGP_WTSI_8_87229079 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs265334913 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss375404559 | MGP_WTSI_8_87229079 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr8:85431809 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi20708 | CpG island 20708 | 588 bp distal | ||||||
Cpgi20709 | CpG island 20709 | within coordinates | ||||||
Cpgi20710 | CpG island 20710 | 1397 bp proximal | ||||||
Lyl1 | lymphoblastomic leukemia 1 | 240 bp downstream | ||||||
Nfix | nuclear factor I/X | within coordinates | ||||||
Rr187001 | regulatory region 187001 | within coordinates | ||||||
Rr368567 | regulatory region 368567 | 554 bp downstream | ||||||
Tssr78439 | transcription start site region 78439 | 1765 bp downstream | ||||||
Tssr82117 | transcription start site region 82117 | 42 bp upstream | ||||||
Tssr82118 | transcription start site region 82118 | 5 bp upstream | ||||||
Tssr82119 | transcription start site region 82119 | 10 bp downstream | ||||||
Tssr82120 | transcription start site region 82120 | 87 bp downstream | ||||||
Tssr82121 | transcription start site region 82121 | 634 bp downstream | ||||||
Tssr82122 | transcription start site region 82122 | 869 bp downstream | ||||||
Tssr82123 | transcription start site region 82123 | 1018 bp downstream | ||||||
Tssr82124 | transcription start site region 82124 | 1047 bp downstream | ||||||
Tssr82125 | transcription start site region 82125 | 1131 bp downstream | ||||||
Tssr82126 | transcription start site region 82126 | 1320 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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