rs265365237 SNP Detail

Summary

• ID
  rs265365237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36914773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATGTTT ATTTCCAGTC
  TTACATTCTG GTAAATAAAC TGAATTAACT ACTAAATAAT ACTGCATTAC TCATTATTAA
  TTAACGTAGT TAGTAAGAAA TTACATTAAA TAACATGAAT AAACTACTAA ATATTGTTGC
  AGAGGGCAGG AGAGATGGCT CAGGGATTAA GAGCTCTTGG CACTCTTCCA GAGACGTTAA
  Y
  TTGTTCAATT TCCAGCACCT TGGCTTACAA CTGCCTGTAA GTCCAGCTCC AGGGAATCTG
  ACATTCTCTT GTGGCCTCTG CATGTACTCA TACTCACTTG CAGAGATCCG CACACACATA
  CAGCAAAGTG AAACTTCAAA GCCAGTACAT TAACAGAACT ATGTATGACA TGCCAAGGGA
  ACCCAGTAAA GGTGCAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400282687	MGP_WTSI_18_36941374	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265365237					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400282687	MGP_WTSI_18_36941374	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36914773 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9877	CpG island 9877	1026 bp proximal
Hars1	histidyl-tRNA synthetase 1	within coordinates
Hars2	histidyl-tRNA synthetase 2	1484 bp upstream
Rr352752	regulatory region 352752	27 bp proximal
Rr353948	regulatory region 353948	573 bp distal
Rr405605	regulatory region 405605	1303 bp upstream
Tssr150671	transcription start site region 150671	1502 bp upstream
Tssr150672	transcription start site region 150672	1516 bp upstream
Tssr152977	transcription start site region 152977	1376 bp downstream
Tssr152978	transcription start site region 152978	1393 bp downstream
Tssr152979	transcription start site region 152979	1426 bp downstream