rs265368702 SNP Detail

Summary

• ID
  rs265368702
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23493312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAACACA GTCAAGGTTG
  GTATGCCTTA CACAGCTATA CAGAGTAGAT CTATGCCACA TTCGCTTCAT CTTTTATTTT
  GAAGGCAAAG CATAGTAGCT AAAATATGTG TGGCCCGTAC GGGGATCGAA CCCGCGACCT
  TGGCGTTATT AGCACCACGC TCTAACCAAC TGAGCTAACC GGCCAGACAT GAGAGTTGCT
  Y
  CTACGACCTC TACAGATATT TGATGACAAC GTTGACAACT AAGAGTTTCG TCTTGTTTTT
  CGAAATTTTA AGATTTTTTT TAAAGATGTA AAAACTTACA AACCACCTTA TTCGAAGCAG
  AAAGTTTTTA GCAGCAGAAA AAAAAAATCC GTACGAGAGC AACAAATGTC TCCTTGCACT
  CACTCATTCA TCAACTCGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387980039	MGP_WTSI_13_23401011	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265368702					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387980039	MGP_WTSI_13_23401011	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23493312 () rs orientation: forward

Symbol	Name	Function Class
4930557F10Rik	RIKEN cDNA 4930557F10 gene	within coordinates
4930597G05Rik	RIKEN cDNA 4930597G05 gene	289 bp downstream
Cpgi5346	CpG island 5346	347 bp proximal
n-TIaat9	nuclear encoded tRNA isoleucine 9 (anticodon AAT)	17 bp upstream
n-TVcac11	nuclear encoded tRNA valine 11 (anticodon CAC)	1441 bp downstream
Rr475820	regulatory region 475820	1217 bp distal
Rr475821	regulatory region 475821	within coordinates
Tssr121691	transcription start site region 121691	1011 bp downstream