rs265383309 SNP Detail

Summary

• ID
  rs265383309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156080105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTTTTT TTTTTTTTTT
  TTTTTCTCTC CCTGAGACAA TACTTCTCTG TGTAGCCCTG GTTATCACCC AAGTGCTGGG
  ATTAAAGGTT GATAGTGAGA ATTTGGAATT TTGGTTGCTT TAAAAATCAC AAATATTATA
  AGGGTGTGCT TCCATTTTAA TCCCAGGCAT AAAGATGTGG GGCTGCTCTG GACTCTCCAT
  R
  GCAGCTGACT GTGATTTGCC TTGCGCTGTA GCAGAGGCGT GGTTTTGCCA GCTATAGAAA
  ATGTTCTGCG ATTGATTGAC ATTTGGAATT CTGGGAACTT TTCAGAGGAT ATATAAATGC
  TAGGGCACCT AGAGGTGTGA TTGGTGGGTG TTCAGGGAGG TTGGTTATGG TTTGCTAGTA
  GTCATTCTCA AAGAAGAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444417	CHEV_4_155369757	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265383309					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156080105 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15496	CpG island 15496	1811 bp distal
Rr100725	regulatory region 100725	1104 bp distal
Rr377473	regulatory region 377473	1275 bp downstream
Sdf4	stromal cell derived factor 4	within coordinates
Tssr40753	transcription start site region 40753	691 bp upstream