rs265388172 SNP Detail

Summary

• ID
  rs265388172
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108882768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTGTTGT CCACACAGGG
  AAGCTTCCGC CCGCTGCTGG CTTCGCTCCT AGCGTTTGAT CACAACCTGT TCATAGGCTC
  CAGATCCTAC CCTGAAACGG TAGTGAGAGG AAAACCTTCA GTTGAACTGC AGAGGCGGCA
  ACCTCCAGAG AACTCTCCTC CCAGGCACGC CTGCTGGTTT CCTTTCCCCC TTTTGAGACA
  K
  GGTTTCTCTG TGTAGTTCTG GCTGTCTTGG AAAGCCAGTC TGGCCTAGGC TTTCTGGGAT
  TAAAGGCTGT GCTACCGCCA CCCAATCCTA AAATCAGTGT CAGTCAGGGC AGTACATAGG
  ATTTCCCTGG AGAGCGATGA GAGGCTTAAT AATACTGTAG GTCTTAATAT ATCTTTTTAG
  AAAGGGAAAA GCCCTTTTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320867126	CHEV_3_108778370	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265388172					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108882768 () rs orientation: forward

Symbol	Name	Function Class
Eeig2	EEIG family member 2	Intron
Gm65815	predicted gene, 65815	within coordinates
Rr583360	regulatory region 583360	842 bp distal
Tssr35213	transcription start site region 35213	1039 bp downstream
Tssr35214	transcription start site region 35214	1098 bp downstream
Tssr35215	transcription start site region 35215	1115 bp downstream
Tssr35216	transcription start site region 35216	1241 bp downstream