rs265398809 SNP Detail

Summary

• ID
  rs265398809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:120883111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCGCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCAATTT ATTTATTTAT ATAATATATG TGAGTATACT GTCACTGAGG
  AGGGCATCAG ACGCCATTAC AGATGGTTGT AAGCCACTAT GTAGTTAGTT GCTGGGAATT
  GAACTTGGGA CCTCTGGAAG AACAGTCAGT GCTCTTAACG GCTGAGCCAT CTCTCCAGCC
  Y
  ACAATATGTG TTCTTAACTG CTGAACCATT TCACCAGCTT CAGAAGTTGA GATTAGCCTT
  AAACTCTAGA GCTGTGTGTC TTCTCTTCTA GAGTGCTGGG ATCAGTCAGG TAGCCACCAT
  GTCCTTGAGT TGAGAAAATA GTCTATTCTG GTTTGTGGCT GAAGAAGAGA TCAAATCAGG
  TTGAGGTATG TTGTTAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366481657	MGP_WTSI_5_121195055	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265398809					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366481657	MGP_WTSI_5_121195055	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:120883111 () rs orientation: forward

Symbol	Name	Function Class
Gm43068	predicted gene 43068	990 bp upstream
Oas2	2'-5' oligoadenylate synthetase 2	within coordinates
Rr619425	regulatory region 619425	1240 bp proximal
Rr619426	regulatory region 619426	1588 bp proximal
Tssr52959	transcription start site region 52959	1442 bp upstream
Tssr52960	transcription start site region 52960	1383 bp upstream
Tssr52961	transcription start site region 52961	1348 bp upstream
Tssr52962	transcription start site region 52962	1200 bp upstream
Tssr52963	transcription start site region 52963	1153 bp upstream
Tssr52964	transcription start site region 52964	871 bp upstream
Tssr52965	transcription start site region 52965	803 bp upstream
Tssr52966	transcription start site region 52966	733 bp upstream
Tssr52967	transcription start site region 52967	697 bp upstream
Tssr52968	transcription start site region 52968	659 bp downstream
Tssr52969	transcription start site region 52969	716 bp downstream