rs265402428 SNP Detail

Summary

• ID
  rs265402428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115628303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCATCCCA AGCGACTGCC
  GCGTAGTTTG CAAAACACGG ATGTTCGGGC TCGAGATAAC CCACTGGCAA GAACGTGTCC
  ACGCAGATAA CCGAGATGGA ACCGCCGGGC TCCGCTCCCG TCACGTGGAG GTCGCGCGTG
  GACTGAAGCT CACCGTGACT GAAATGGGAG TCGTCAGCCC TGGGAGGCTG AGCGAGCACG
  Y
  TTACTCGTCA GCTTTGCGCA GTGGCAGTAT CGTAGCCAAT GAGGTTTATC CGAGGCGCGA
  TTATTGCTAA TTGAAAACTT TTCCCAATAC CCCGCCATGA CGACTTGAAA TATAGTCGGC
  ATTGGCAATT TTTGACAGTC TCTACGGAGA CTGAATATTC ATGTTTAAAC ATTAGACTTG
  CATTCTACTT TATAGTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366357776	MGP_WTSI_5_115940253	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	T	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265402428					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	T	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366357776	MGP_WTSI_5_115940253	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115628303 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16375	CpG island 16375	within coordinates
Cpgi16376	CpG island 16376	1547 bp proximal
Gm13836	predicted gene 13836	1711 bp downstream
Gm24265	predicted gene, 24265	645 bp downstream
Gm24407	predicted gene, 24407	10 bp upstream
Gm57305	predicted gene, 57305	235 bp upstream
Rr1425	regulatory region 1425	within coordinates
Rr108333	regulatory region 108333	1903 bp distal
Rr124163	regulatory region 124163	within coordinates
Rr124164	regulatory region 124164	1497 bp proximal
Tssr48292	transcription start site region 48292	922 bp downstream
Tssr48293	transcription start site region 48293	786 bp downstream
Tssr48294	transcription start site region 48294	710 bp downstream
Tssr48295	transcription start site region 48295	within coordinates
Tssr48296	transcription start site region 48296	82 bp upstream
Tssr48297	transcription start site region 48297	1726 bp upstream
Tssr52808	transcription start site region 52808	1312 bp upstream
Tssr52809	transcription start site region 52809	1295 bp upstream
Tssr52810	transcription start site region 52810	661 bp upstream
Tssr52811	transcription start site region 52811	404 bp upstream
Tssr52812	transcription start site region 52812	291 bp upstream
Tssr52813	transcription start site region 52813	263 bp upstream
Tssr52814	transcription start site region 52814	208 bp upstream
Tssr52815	transcription start site region 52815	40 bp upstream
Tssr52816	transcription start site region 52816	100 bp downstream
Tssr52817	transcription start site region 52817	1642 bp downstream