rs265404185 SNP Detail

Summary

• ID
  rs265404185
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92470421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATTCCTGT TTGTTAAAGA CACGAGCCTC
  CTGTCACAAG GTAAGGCTCT TTTTCACCCT GTCTGGCTCT GTGCGCTGAA GATGTCTGAA
  GATAATAAGA AAGCTAGATA ATTTaaggaa ggaaggaagg aaggaaggaa ggaaggaagg
  M
  aggaaggaag gaaggaaggg agggagggag aaaggaagga aggcaggCAA Tcaggtgtag
  tagcacacac ctttaacccc agcattcagg aggcagtaga atacagatat gtatgaattt
  gagaccagcc ttgtctactt tgagagtttt                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321612234	CHEV_5_92751588	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265404185					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92470421 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614602	regulatory region 614602	375 bp distal
Rr614603	regulatory region 614603	685 bp proximal
Tssr47287	transcription start site region 47287	422 bp upstream
Tssr47288	transcription start site region 47288	1205 bp upstream
Tssr47289	transcription start site region 47289	1222 bp upstream
Tssr47290	transcription start site region 47290	1234 bp upstream
Tssr47291	transcription start site region 47291	1275 bp upstream
Tssr51864	transcription start site region 51864	170 bp downstream
Tssr51865	transcription start site region 51865	248 bp downstream
Tssr51866	transcription start site region 51866	537 bp downstream
Tssr51867	transcription start site region 51867	1129 bp downstream
Tssr51868	transcription start site region 51868	1185 bp downstream
Tssr51869	transcription start site region 51869	1231 bp downstream
Tssr51870	transcription start site region 51870	1273 bp downstream
Tssr51871	transcription start site region 51871	1307 bp downstream