rs265421076 SNP Detail

Summary

• ID
  rs265421076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:81472616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGCATAC TATTTTTAGT
  GAGGCAGAAA CTTTGTAAAA TATGTTTCTT CATCTAGTAA ACATGAAATA ACCAGCATGG
  AGCCCTAAAA TTCAGTACTA AGGTTTTGAC ACTACAGGGT CTCTCTAATC AGTTGACATA
  GAATTGCTTC AAGTATTAAT AAGAATGTAA AAAACTTAAA TTTTAAGTTT TTCCTTCTTT
  Y
  CTCCCTCCCT CCTTCCTTTT TTTCTTGTTT GTTTGAGACA GGCCTCTTCA TGTAACCCTG
  GCTGTCCTGG AACTTGCTCA GTAAAACATG CTGGTCTTGA ACTCACAGAG GTCCACCTGC
  CTCTGCCTCC CAAAGTCTGG GATGAAAGTT ATATGCCACC ACCACCAGAC TACAAACTTT
  GATGTATCTT TATATATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389224722	MGP_WTSI_13_81463496	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265421076					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389224722	MGP_WTSI_13_81463496	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:81472616 () rs orientation: forward

Symbol	Name	Function Class
Adgrv1	adhesion G protein-coupled receptor V1	within coordinates
Rr277293	regulatory region 277293	1416 bp distal
Rr285047	regulatory region 285047	333 bp distal
Rr285048	regulatory region 285048	984 bp proximal