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rs265435468 SNP Detail
Summary
  • ID
    rs265435468
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:126048033 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCAAACTCAC GGCCAGTGTA
GGCACGGTCT GTCACTTCCT CATTCTCCGA AAAGATGCCA ATTCGTCGGC AGATGGCAAT
GGCTGTACCC TTGTTGTCCC CAGTGATCAT GATCACTCGG ATCCCAGCAT CACGACACAG
CTGGATAGAG CCTGTGACCT CCTTGCGGGG TGGATCCAAC ATGCCCACAA CACCAACAAA
Y
GTCAGGTCCA TCTGGAAAGA TGGTGACATG TTGGTCAGGG AGGAATTTGG GACAGACAGG
AGGAAGTTCA GAGGAAGATG GGCAGTACTG TTGGTGACGC TGGGGCCTGC TGCCTTGGTA
CCTGGTGTTG GACATCAGTA GGACCTTGGA AGCACAGGGC CAGAAAACAT AATTCCTGCA
ATCCTTATAA TGCCTGCCCT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss373068775 MGP_WTSI_7_133592375 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265435468 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss373068775 MGP_WTSI_7_133592375 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:126048033 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Atp2a1 ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 within coordinates
Tssr2394 transcription start site region 2394 1221 bp upstream
Tssr69023 transcription start site region 69023 947 bp downstream
Tssr74665 transcription start site region 74665 1947 bp upstream
Tssr74666 transcription start site region 74666 1888 bp upstream
Tssr74667 transcription start site region 74667 1860 bp upstream
Tssr74668 transcription start site region 74668 1657 bp upstream
Tssr74669 transcription start site region 74669 1643 bp upstream
Tssr74670 transcription start site region 74670 1387 bp upstream
Tssr74671 transcription start site region 74671 1366 bp upstream
Tssr74672 transcription start site region 74672 1349 bp upstream
Tssr74673 transcription start site region 74673 1210 bp upstream
Tssr74674 transcription start site region 74674 1182 bp upstream
Tssr74675 transcription start site region 74675 1168 bp upstream
Tssr74676 transcription start site region 74676 959 bp upstream
Tssr74677 transcription start site region 74677 916 bp upstream
Tssr74678 transcription start site region 74678 895 bp upstream
Tssr74679 transcription start site region 74679 875 bp upstream
Tssr74680 transcription start site region 74680 857 bp upstream
Tssr74681 transcription start site region 74681 831 bp upstream
Tssr74682 transcription start site region 74682 820 bp upstream
Tssr74683 transcription start site region 74683 617 bp upstream
Tssr74684 transcription start site region 74684 515 bp upstream
Tssr74685 transcription start site region 74685 479 bp upstream
Tssr74686 transcription start site region 74686 223 bp upstream
Tssr74687 transcription start site region 74687 187 bp upstream
Tssr74688 transcription start site region 74688 102 bp upstream
Tssr74689 transcription start site region 74689 31 bp upstream
Tssr74690 transcription start site region 74690 381 bp downstream
Tssr74691 transcription start site region 74691 424 bp downstream
Tssr74692 transcription start site region 74692 1291 bp downstream
Tssr74693 transcription start site region 74693 1317 bp downstream
Tssr74694 transcription start site region 74694 1440 bp downstream
Tssr74695 transcription start site region 74695 1641 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory