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rs265437605 SNP Detail
Summary
  • ID
    rs265437605
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:12767090 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCAAACCTCC CTTAATGAGG
    GGACTATAGG CATTGGCTAC TAACCTAAGT ATAGGAATGT GTATATAAAA GGCCTAGGCT
    CAGTACCTAT TTCCTTCAAT GTACAGAGTC ACCTCCAGGA TATCCACAAC CTTTTTATTC
    AATTTGCACT CCTAGACTGT ATCAAGAATC TGTCTTGGGA GCCGGGCAGT GGTGGCACAC
    R
    CCTTTAATCC CAGCACTTGG GAGGCAGAGG CAAGTGGATT TCTGAGTTCG AGGCCAACCT
    GGTCTACAGA TGAGTGCCAG GACAGCCAGG GTTACATAGA GAAACCCTGT CTCCCCCCCC
    CCCCCCAAAA AGAATCTGTC TTTGGCCAGG GATATGACTG AGGTAGGGCC CTGCCCCATA
    TTTACAAAAT CCTGGAGTCC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss370654932 MGP_WTSI_7_13618512 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs265437605 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss370654932 MGP_WTSI_7_13618512 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:12767090 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Chmp2a charged multivesicular body protein 2A within coordinates
Cpgi18334 CpG island 18334 1078 bp proximal
Rr368233 regulatory region 368233 1480 bp upstream
Tssr64534 transcription start site region 64534 1701 bp upstream
Tssr70642 transcription start site region 70642 789 bp downstream
Tssr70643 transcription start site region 70643 856 bp downstream
Tssr70644 transcription start site region 70644 960 bp downstream
Tssr70645 transcription start site region 70645 1238 bp downstream
Tssr70646 transcription start site region 70646 1441 bp downstream
Tssr70647 transcription start site region 70647 1540 bp downstream
Tssr70648 transcription start site region 70648 1559 bp downstream
Ube2m ubiquitin-conjugating enzyme E2M 1957 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory