rs265442416 SNP Detail

Summary

• ID
  rs265442416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88188236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCACAGC GGGGCATGGT
  GACAGGCAAG GGGAGATCAA ACTACTGCCC AGCCTGTCCC CAGGGACCTT GTTCCTAAAG
  CAAAAAGGCA GATGCATGCA TAGACACTGT GAAGCGCTAC ACCTGGGAGA CGGTACTCAC
  ACAAAGCCTA CCCTTCCCCT TTCTCAGAGA CCCGAGATTA TCAGTGTTTG GGCCACTGGA
  Y
  CAGGAGTCTA GTGGGGCCCG CCCGGAACAG TTTGGTGGGG CAACCAAAAG GGTAATTAGT
  CCCATGGCTA GAAATCTGGA AGGGGAAGAA AAGAGAGCAA GGACAACTTT CTCATCCTTG
  GGTTGCTACT GAGGCCAGGG CAGGAAAAAA TGCTCAAGGC AGCACCTCCA CAGGAGAGAT
  GCTCACCCTG TCTGAAGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	C57BL/6J	DBA/1J	FVB/NJ	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss350399158	MGP_WTSI_1_90157089	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	C57BL/6J	DBA/1J	FVB/NJ	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs265442416					SNP	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399158	MGP_WTSI_1_90157089	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88188236 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	1957 bp downstream
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	1236 bp distal
Rr18062	regulatory region 18062	1365 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	1389 bp downstream
Tssr7959	transcription start site region 7959	1369 bp downstream
Tssr7960	transcription start site region 7960	1346 bp downstream
Tssr7961	transcription start site region 7961	1317 bp downstream
Tssr7962	transcription start site region 7962	1157 bp downstream
Tssr7963	transcription start site region 7963	1127 bp downstream
Tssr7964	transcription start site region 7964	1100 bp downstream
Tssr7965	transcription start site region 7965	1076 bp downstream