rs265458776 SNP Detail

Summary

• ID
  rs265458776
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88373809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGT GGGCGAAGGA GCGGCAGTAC
  R
  TAGCGAAGGT TCTAGGATAG GAGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325500672	CHEV_17_88465721	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265458776					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88373809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9636	CpG island 9636	within coordinates
Fbxo11	F-box protein 11	1090 bp upstream
Rr333911	regulatory region 333911	1192 bp proximal
Rr333912	regulatory region 333912	1992 bp proximal
Rr340317	regulatory region 340317	within coordinates
Rr344409	regulatory region 344409	1882 bp proximal
Rr370332	regulatory region 370332	97 bp upstream
Rr405528	regulatory region 405528	within coordinates
Tssr146222	transcription start site region 146222	1580 bp downstream
Tssr146223	transcription start site region 146223	1552 bp downstream
Tssr149795	transcription start site region 149795	652 bp upstream
Tssr149796	transcription start site region 149796	550 bp upstream
Tssr149797	transcription start site region 149797	508 bp upstream
Tssr149798	transcription start site region 149798	388 bp upstream
Tssr149799	transcription start site region 149799	294 bp upstream