rs265471824 SNP Detail

Summary

• ID
  rs265471824
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143101183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGCCGCCT GACGTCACAT
  CCGCTCCCGC AATTCCGAAT CTGGAACCCG CGCGATGAAG AGAGCGTTTG TGACTGTCGG
  GACCACCAGT TTCGACGAGC TCGTCGCACG GGTGGTCGCT AACGACTGCG TTCAGGTGAG
  TCGGGGCTGG GCGGCCGGCG GGCGGCGGGC GGCGGGCGGC GGGCAGCTCG GGCTGCTTGG
  K
  GCTGGCCGCT TTAAGCTCTG CTCGCCTTCC CGAGGCGCCG GGGGAGCTGA AAGGAAGCTT
  GGCGGCTGTG GCTCCTGCTC TGCTGTGCCC TAGCCCACGG CTCCGCCAGT CCCCCACCCC
  GCCGTTTCTT CTCCCTCCCG CTTCAGCCCC TTCATGCGAC CTCACTGGCC CTCCCACGGC
  GTTCCCCCAC GACTGTCATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404807580	MGP_WTSI_X_140752730	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs265471824					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404807580	MGP_WTSI_X_140752730	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143101183 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates
Cpgi22981	CpG island 22981	within coordinates
Gm33235	predicted gene, 33235	191 bp upstream
Rr8342	regulatory region 8342	within coordinates
Rr9318	regulatory region 9318	1183 bp distal
Tssr162274	transcription start site region 162274	386 bp downstream
Tssr162275	transcription start site region 162275	153 bp downstream
Tssr162276	transcription start site region 162276	131 bp downstream
Tssr162277	transcription start site region 162277	107 bp downstream