rs265495942 SNP Detail

Summary

• ID
  rs265495942
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51107024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAGGT GGGAAGCTAG
  AAAGATAGGT CAGTTGATAA AACATCTAGA TGACAGTAAG GCTCAGTAGT CTATGACTGT
  AATCCCAACA CTGAAAGGCA GGCAGATTCT TACATCAAGC TGGCCAGCCA GCCTACCAAA
  AGTAACTCGA GAAGCAATAG AATAAGACAC CTGGTGTGGA GTTCTAGTCT CCACATACCC
  G
  TATATATATC CGCATATGCA CATACTCTTG CACACACAAA CAAACACATA CACACATATA
  CACACCCAAC GAGTAATAAG GAATTTCAGA ATTAATCCAA TATGTATGTA TGTATGTATG
  TATGTATGTA TGTATGTATG TATTGAAACA AGGTCTCACT AAAAAGGTCT GACTGACCTG
  GAACTACTAT ACAGATTCCA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	SPRET/EiJ
ss391081546	MGP_WTSI_14_51489242	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	SPRET/EiJ
rs265495942					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391081546	MGP_WTSI_14_51489242	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51107024 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6408	CpG island 6408	710 bp proximal
Gm26782	predicted gene, 26782	685 bp upstream
Rr404075	regulatory region 404075	947 bp upstream
Rr491714	regulatory region 491714	412 bp proximal
Rr491715	regulatory region 491715	807 bp proximal
Rr491716	regulatory region 491716	983 bp proximal
Rr491717	regulatory region 491717	1914 bp proximal
Tep1	telomerase associated protein 1	within coordinates
Tssr125373	transcription start site region 125373	788 bp upstream
Tssr128379	transcription start site region 128379	212 bp upstream
Tssr128380	transcription start site region 128380	932 bp downstream
Tssr128381	transcription start site region 128381	990 bp downstream