rs265516033 SNP Detail

Summary

• ID
  rs265516033
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96357205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTGGTTG AGGAGGTAGG CAGAGGCCCG
  TAAGTGAGCC TTTGGAAATG GCCAATTACT GGAGGAGTTT ATTCTTATGA ATTAATTCCT
  GACCAGACTT GGTTTAGAGA AACCACACGG GCAGCTGAGA CATAACGGAT GTTTTTTTTT
  K
  GGGGGGGGGG GGGGTAGGGG GTAGGAAGGG GTCAGAATAA CCTGTGCACT GGTCTCTAAT
  TGGCTACGTa gaacaaaaac aaaaacagac aaactccaaa aaccaaaaca aaaCCCTAGA
  CGTGTTTCGA AAACTCCAAG CAGTGTACTG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321616894	CHEV_5_96638365	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265516033					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96357205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	617 bp proximal
Gm72185	predicted gene, 72185	within coordinates
Mrpl1	mitochondrial ribosomal protein L1	152 bp upstream
Rr367885	regulatory region 367885	605 bp upstream
Rr614892	regulatory region 614892	435 bp distal
Rr614893	regulatory region 614893	within coordinates
Rr614894	regulatory region 614894	158 bp proximal
Rr614895	regulatory region 614895	696 bp proximal
Rr614896	regulatory region 614896	809 bp proximal
Tssr47395	transcription start site region 47395	117 bp upstream
Tssr47396	transcription start site region 47396	398 bp upstream
Tssr47397	transcription start site region 47397	782 bp upstream
Tssr51962	transcription start site region 51962	659 bp downstream