rs265527068 SNP Detail

Summary

• ID
  rs265527068
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84627354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGGGCAGC CGGCGCCGCC
  TCGGGGGGCT CCGCCTCGCC CCAGCCCCCC GAGCTCTGAC GCCGCCCCCG CCCCTCCGCC
  TCCACGCCTC GCTCCCCGGG AGGGGCGCAG ACCCGCGCGC CCGGGGCCGG GGCCGCCTCC
  GGAGCGCCGC GATCCGCCTT TTCTTTCCTT TTTTTTTTTT TTTTTATACT CCCCCCCCCC
  M
  CCCCTTCCCT TTTAAATTTT GGTCGGTGGC GGCGGTGCTG GGCCGGAGGA AAGAAGGGAC
  ACGGAGTCCT CCCTCGCTCA GCCACCCCCT CCCCGCTTCC CCCTGGGCCG GGCTCCGGGA
  GATGTGCCGG GCGGGGGGCC CGGCTTCGCG GAGCCGCCGG AGGAGCGCGC ACGGCCGACC
  CCGAAGCGCC GCTGGACAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CAST/EiJ	CZECHII/EiJ	KK/HlJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss375388206	MGP_WTSI_8_86424624	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CAST/EiJ	CZECHII/EiJ	KK/HlJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs265527068					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375388206	MGP_WTSI_8_86424624	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84627354 () rs orientation: forward

Symbol	Name	Function Class
Adgrl1	adhesion G protein-coupled receptor L1	within coordinates
Cpgi20662	CpG island 20662	within coordinates
Gm26721	predicted gene, 26721	998 bp upstream
Rr186961	regulatory region 186961	within coordinates
Tssr78300	transcription start site region 78300	756 bp downstream
Tssr78301	transcription start site region 78301	632 bp downstream
Tssr78302	transcription start site region 78302	615 bp downstream
Tssr78303	transcription start site region 78303	560 bp downstream
Tssr78304	transcription start site region 78304	237 bp downstream
Tssr78305	transcription start site region 78305	108 bp downstream
Tssr78306	transcription start site region 78306	80 bp downstream
Tssr78307	transcription start site region 78307	8 bp downstream