rs265536075 SNP Detail

Summary

• ID
  rs265536075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158226069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTAAGTACA CTGTAGCTGT CTTCAGACAC CCCAGAAATG
  GACATCAGGT CCCATTATAG ATGGTTGTGA GCCACCATGT GGTTGCTGGG ATTTGAACTC
  Y
  GGACCTTCAG AAGAGCAGTC AGTGCTCTTA ATCTCTGAGC CATCTCTCCA GCCCCCAGGA
  GAGTCTTCTT GAACTCAAAA TTCAAATTGC CCTAAAATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320588887	CHEV_2_158209885	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265536075					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158226069 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21318	transcription start site region 21318	1975 bp downstream
Tssr21319	transcription start site region 21319	1561 bp downstream
Tssr21320	transcription start site region 21320	1525 bp downstream
Tssr21321	transcription start site region 21321	1415 bp downstream
Tssr21322	transcription start site region 21322	1292 bp downstream
Tssr21323	transcription start site region 21323	1248 bp downstream
Tssr21324	transcription start site region 21324	1210 bp downstream
Tssr21325	transcription start site region 21325	1174 bp downstream
Tssr21326	transcription start site region 21326	1150 bp downstream
Tssr21327	transcription start site region 21327	1113 bp downstream
Tssr21328	transcription start site region 21328	1067 bp downstream
Tssr21329	transcription start site region 21329	1054 bp downstream
Tssr21330	transcription start site region 21330	965 bp downstream
Tssr21331	transcription start site region 21331	455 bp downstream
Tssr21332	transcription start site region 21332	320 bp downstream
Tssr21333	transcription start site region 21333	290 bp downstream
Tssr21334	transcription start site region 21334	468 bp upstream
Tssr21335	transcription start site region 21335	824 bp upstream
Tssr21336	transcription start site region 21336	878 bp upstream
Tssr21337	transcription start site region 21337	982 bp upstream
Tssr21338	transcription start site region 21338	1549 bp upstream
Tssr27228	transcription start site region 27228	931 bp upstream