rs265564034 SNP Detail

Summary

• ID
  rs265564034
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:53529375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTGTTTT CTACCTATTT
  TCAGGATAGA GGTTTGGCTG AGTTTACATA GAAGAATCTA GACACACCAA TAACCCATCA
  GTCAGTTAGT GCTAGATACT CTATTCCAGT GGGTTATTAC CAGAAAAATC ATTTAAAACA
  ACCATGTTAA GCTGGGTGTG ACAGTTCATC CCTTTACTGG CATATCACTT TAATCCCAGC
  R
  CCTGAGAAGC ACATGAAGGC AGATCTTTGA GTTTCACGCC AAGATGGCCT CCATAGTTGG
  ACCCTATCTC AAACAAACAG CAACAAAGGA AACAAAATAC AAACCCAGGC CATTGTTTGT
  TTTGTTTTGT TTTTGAGACA GGTCTCACTA TGTAGTCATG GCTGGCCTGA AACTCACTCT
  GTAGATCAGG AGTGCTAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324341562	CHEV_13_53470708	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265564034					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53529375 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi5620	CpG island 5620			1706 bp proximal
Rr403780	regulatory region 403780			1963 bp upstream
Sptlc1	serine palmitoyltransferase, long chain base subunit 1			Intron
				Noncoding-Transcript-Variant
Tssr122581	transcription start site region 122581			1554 bp upstream
Tssr122582	transcription start site region 122582			1020 bp upstream