rs265580387 SNP Detail

Summary

• ID
  rs265580387
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:146371744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTATCAT AAGAAAGGTT
  CCCACTGTTA ACCATTCTCA GAAAAGAAAA AAAAAAGAAA GAAAGAAAGC ACTTCTTTAA
  CATTTTTGGG TTCTTGGCCC CTGGAATAAG TGACTTTCAC CTGATTAGAT GCCACCAGGA
  ACTACTGAGT GTTTCCAACT CCTACTTTCC TGCAGCTCAC CACTCTACAC TGCTTTGGAA
  R
  ATCATGGGAT GTCTCCTTGA ATCGTGGATA TGTTTCTCTC ACACTCATCT TGCTTCATTA
  ACTTTCCTCT GGTAAGTATT TCTTTATATG TGATGAGTAC TTTACTACTT GTGTTAATTT
  TTACTTTTAA AAAATAAGCA CTACTTTTTC TCCACTCTCT CTCTCTCTGT CTCTGTCTTT
  TTCTGCGTTC TTTGTTCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351796318	MGP_WTSI_1_148343136	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265580387					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351796318	MGP_WTSI_1_148343136	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:146371744 () rs orientation: forward

Symbol	Name	Function Class
Brinp3	bone morphogenetic protein/retinoic acid inducible neural specific 3	mRNA-UTR
Cpgi840	CpG island 840	1359 bp proximal
Cpgi841	CpG island 841	1860 bp proximal
Gm29514	predicted gene 29514	844 bp upstream
Rr372193	regulatory region 372193	694 bp upstream
Rr420040	regulatory region 420040	1236 bp distal
Rr420041	regulatory region 420041	1066 bp distal
Rr420042	regulatory region 420042	308 bp distal
Rr420043	regulatory region 420043	1289 bp proximal
Rr420044	regulatory region 420044	1692 bp proximal
Tssr9214	transcription start site region 9214	400 bp downstream
Tssr9215	transcription start site region 9215	370 bp downstream
Tssr9216	transcription start site region 9216	327 bp downstream
Tssr9217	transcription start site region 9217	313 bp downstream
Tssr9218	transcription start site region 9218	299 bp downstream
Tssr9219	transcription start site region 9219	1665 bp upstream