rs265584385 SNP Detail

Summary

• ID
  rs265584385
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:54751096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACATGCTG TTTATTAATT
  TGAAGCACTT CTTACGATTT TATTAGTTGT TTATAGTCTT CCTACTATGG AACTTCTTTA
  TTAAGGCATA GGTGGTCGGT TTATGGTCAT CAGTCTCCTC TATTCACTAC CTTTCATGGA
  TCAGCCATCC TCCTCATTCA TTGTCTCGTG TGGCTGTCAC CCTCCTCCGC TCCGCGCCCC
  Y
  CGAGATCCAC TCCCTCCTCA CTCACTGTCC CCCCCTTCTC CACTGCAGCC CCTCCAGGTT
  GTCTCCCTCA TCATTCACTC TTCCACATGG CTATCAACCT CCTCCATTCA CGGTCCATAG
  GGTCGTCTCT CCTCACTGCC CTCAAAATTG TCACCCTCTA CCACTCATTG CCCCTGAAGG
  TTGTCACCCT CTTACACTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss383427738	MGP_WTSI_11_54673772	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs265584385					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383427738	MGP_WTSI_11_54673772	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54751096 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2891	CpG island 2891			217 bp proximal
Gm31490	predicted gene, 31490			within coordinates
Gm57377	predicted gene, 57377			517 bp upstream
Lyrm7	LYR motif containing 7			Intron
				Noncoding-Transcript-Variant
Rr386093	regulatory region 386093			within coordinates
Rr447402	regulatory region 447402			1562 bp distal
Rr447403	regulatory region 447403			746 bp distal
Rr447404	regulatory region 447404			27 bp proximal
Rr447405	regulatory region 447405			329 bp proximal
Rr447406	regulatory region 447406			528 bp proximal
Rr447407	regulatory region 447407			632 bp proximal
Rr447408	regulatory region 447408			834 bp proximal
Tssr3501	transcription start site region 3501			497 bp upstream
Tssr101539	transcription start site region 101539			520 bp upstream
Tssr101540	transcription start site region 101540			745 bp upstream
Tssr108005	transcription start site region 108005			294 bp downstream