rs265587190 SNP Detail

Summary

• ID
  rs265587190
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:136497710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGTACCA GGAATGAAGG
  CAGTTCTGCC TTTTTGAGAC TTTGATGCTT CTGAGGTGGT TTCCCCTCAC CCCATTTTGT
  ACTCCTAGTA TTTGAGTTTA TGTATTTAAG CTTAACATTT TTGTTTGAAT GCATGGGTAA
  TTGTGTCATG CGTTAATATT GAGCATCATA AGAGGCACTA GAAAATTACA TAACATGCAA
  K
  TTCAATATTG ATGGGACAGT TTTGCTGTAT TTCTTAGAAG GTAAATGTAA TTTTAAGTTT
  ACTAAAATTA ATGAATTGTC TGAATGTCAG TGGTTGATTC TTTAGTATTT TAGAAACAAG
  TACTAAAAGT TTGAAATTTT AGTTTGGTTA TAATTAAATG AAGCATTGTG CATGTATGTA
  CACACACACA CACACACACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370211584	MGP_WTSI_6_136469233	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265587190					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370211584	MGP_WTSI_6_136469233	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136497710 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atf7ip	activating transcription factor 7 interacting protein			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi18104	CpG island 18104			1372 bp distal
Gm44140	predicted gene, 44140			1996 bp upstream
Rr400014	regulatory region 400014			1843 bp downstream
Rr400015	regulatory region 400015			1446 bp downstream
Rr640002	regulatory region 640002			1900 bp distal
Rr640003	regulatory region 640003			933 bp distal
Rr640004	regulatory region 640004			1225 bp distal
Rr640005	regulatory region 640005			26 bp distal
Tssr59315	transcription start site region 59315			1902 bp downstream
Tssr59316	transcription start site region 59316			1861 bp downstream
Tssr59317	transcription start site region 59317			1837 bp downstream
Tssr59318	transcription start site region 59318			305 bp downstream
Tssr63804	transcription start site region 63804			1940 bp upstream
Tssr63805	transcription start site region 63805			1635 bp upstream