rs265590822 SNP Detail

Summary

• ID
  rs265590822
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172525320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCAATGG TACATTTGGG
  ATAGGACAGG TGTTCCATTC AGTCAAAGGT CTCTGATAAG TCTAGGCAGT TGGCCAGGGA
  AAGTTTGTTC TTGGTACTGG GAATGGAATG CTTGTTTTCT TCATTTCCCA ATATGGAAAA
  GAGCAGCTTC CAGGACAGGT TAGCAGACAC TGGAGATGCA GCCATCATAT GCACACACAC
  R
  AGTGCTCATC TATTAAGCTA AAATTTCCCA TTATTTTTCT CAGTAGAGCT AGGCCAAGTG
  GAGCCTTGGG AAGCTTTCTC ATTTTTCCTG TCACACAGAA GCTGGTGATT CAGGGGTCAC
  AGGAGTTTGT AATAAATAAC CCACATTGAT TTCTCTGTTC TAGAATGATT TTTTTTTTGC
  TTCTCTTTCT CCCAGTGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352411479	MGP_WTSI_1_174627884	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265590822					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352411479	MGP_WTSI_1_174627884	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172525320 () rs orientation: forward

Symbol	Name	Function Class
Crp	C-reactive protein, pentraxin-related	303 bp upstream
D1Mit149	DNA segment, Chr 1, Massachusetts Institute of Technology 149	1476 bp proximal
D1Mit149.1	DNA segment, Chr 1, Massachusetts Institute of Technology 149.1	1324 bp proximal
Rr423653	regulatory region 423653	within coordinates
Rr423654	regulatory region 423654	141 bp proximal
Tssr10246	transcription start site region 10246	293 bp upstream
Tssr10247	transcription start site region 10247	1236 bp upstream
Tssr10248	transcription start site region 10248	1302 bp upstream
Tssr10249	transcription start site region 10249	1326 bp upstream
Tssr10250	transcription start site region 10250	1381 bp upstream
Tssr10251	transcription start site region 10251	1437 bp upstream
Tssr10252	transcription start site region 10252	1503 bp upstream
Tssr10253	transcription start site region 10253	1552 bp upstream
Tssr10254	transcription start site region 10254	1617 bp upstream