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rs265591381 SNP Detail
Summary
  • ID
    rs265591381
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr15:81819166 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGTTCGAGGC CAGCCTGGTC
    TACAGATTGA GTTCCATCTG AACTATTCTC ATTAGGGTTT TTCCCTTACT TGTTTTACCG
    TTCTTCTCTA TACCTTTACC TTCATTCCAG TGGATGTCTT TCCAAGTTTT GTTTTTTTTT
    TTAATGATTT TTGTTTATGT GTATCATGTC TGTGTGTCTG TGTGAGAACG TGCCACATAT
    R
    TGCAGGTGAG TTGGAACCCT CTCGAGCTGG AGTGGCAGGC AGTTAGGACT TGCCATACGT
    GGGAGCTGGG ACCCATGCAG GCTCCCCAGA AAAGCAGCGT AACTACTGCG CACTGGTTTG
    TTTGATTTGT TTTGTTTTTA GGACACTGGG GTCTTCTCAT AGAGTCTAGG CTGACCTCAA
    ATTCACAGCA ATCTTTGGCC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss394729710 MGP_WTSI_15_81765395 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265591381 SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss394729710 MGP_WTSI_15_81765395 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:81819166 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi7402 CpG island 7402 1909 bp proximal
Csdc2 cold shock domain containing C2, RNA binding 1794 bp upstream
Gm62067 predicted gene, 62067 within coordinates
Rr506348 regulatory region 506348 1609 bp distal
Rr506349 regulatory region 506349 556 bp distal
Rr506350 regulatory region 506350 1316 bp proximal
Rr506351 regulatory region 506351 1733 bp proximal
Rr506352 regulatory region 506352 1805 bp proximal
Tssr132315 transcription start site region 132315 1788 bp upstream
Tssr132316 transcription start site region 132316 1881 bp upstream
Tssr132317 transcription start site region 132317 1915 bp upstream
Tssr132318 transcription start site region 132318 1946 bp upstream
Tssr135513 transcription start site region 135513 1730 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory