rs265600993 SNP Detail

Summary

• ID
  rs265600993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107427006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCAGAA CACCCTTCAG
  GATCAGTGTG AAGGGTACAG GGTACACATT TAGGATTCTG GGATACCTCA CCCGAGATGG
  GACTAGAGTT TGACTCTGAG GCAGACAAGT CCTGTGAACC ATTTGTTGAA GACTCCACCT
  TGTTCTGACG TCTGGTGGCC CAGGCTTTCT AACCTTGCCA GGCAGTGGTG GACAGTCCTC
  Y
  GGACCACACA CTCTCAAAGA TAACACAACA CCCACCGGCA TCCGGTGGGC TCCTTCTCCT
  CCCCCAGGCA AGCTGCAGCA TTTTGAGAGT GGCCGATGGC AGACGGTGGC CCCCTCAGAG
  CAGCAAAAGC TGAATAAACT GGATGGGCAA GTATGGATCG CCCTGTACAA TCTACTGCTC
  AGCCCTGAGG CCCGAGCCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378850594	MGP_WTSI_9_107452138	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265600993					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378850594	MGP_WTSI_9_107452138	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107427006 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22292	CpG island 22292	1132 bp proximal
Gm34106	predicted gene, 34106	within coordinates
Rassf1	Ras association (RalGDS/AF-6) domain family member 1	1746 bp upstream
Rr368855	regulatory region 368855	1293 bp upstream
Rr686535	regulatory region 686535	1436 bp proximal
Tssr86984	transcription start site region 86984	963 bp upstream
Tssr86985	transcription start site region 86985	1612 bp upstream
Tssr86986	transcription start site region 86986	1709 bp upstream
Tssr91394	transcription start site region 91394	1028 bp downstream
Zmynd10	zinc finger, MYND domain containing 10	within coordinates