rs265604183 SNP Detail

Summary

• ID
  rs265604183
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101276779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGCTGCT CGGGACGGAG
  GTGGGCCCCT CCAGTTGCAG GCAGCGGCCA CTGTGGGGGG AAGCGACAGT CACCGAGAAG
  CGCCCGGAGA GCTGCTCCCA CTCTGCCCAC GTGCGGGGAC CGGCAGGGGC TTCCCGGAGT
  TGCGCGCCTG GACTGGGCAG CAGGGAAGGA CTCGGGTGGG TCTGACTGAC CTCTGACCCC
  R
  GAGGGCCGAG CTTGCAGGCC GGGGGATGGG AGTGGGGGTG GGGTGGGGGC TGCGACGGTT
  CACCGGAGCG GCCGGGGCCC GAGGAGGTGG CGGAGGGCGG GGCCGAGGGG CGGGGCAGTC
  TTTAAAGCCT CTCCTTTCCC CTGTAGGGGT GGCAGGCGAG TCCCCGCGTG CGGAGGGTGT
  CGAGGCAGGG GCTGCTGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362614066	MGP_WTSI_4_101092187	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265604183					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362614066	MGP_WTSI_4_101092187	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101276779 () rs orientation: forward

Symbol	Name	Function Class
Ak4	adenylate kinase 4	within coordinates
Cpgi14500	CpG island 14500	within coordinates
Gm69573	predicted gene, 69573	within coordinates
Rr596145	regulatory region 596145	253 bp distal
Rr596146	regulatory region 596146	245 bp distal
Rr596147	regulatory region 596147	905 bp proximal
Tssr37989	transcription start site region 37989	250 bp downstream
Tssr37990	transcription start site region 37990	233 bp downstream
Tssr37991	transcription start site region 37991	204 bp downstream
Tssr37992	transcription start site region 37992	114 bp upstream
Tssr37993	transcription start site region 37993	571 bp upstream