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rs265613999 SNP Detail
Summary
  • ID
    rs265613999
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr1:34524380 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCAGTTATT GTTTCTAGAG
    GGTGAGATCT TTCAAAATCT ATGTTTTTAG ATTTCCAGCT CATTATTGTT ACCCAGTCAT
    GCTATTGTGC TCACGAAAAT TTCTACCTAA CTGGACTTAG TTTGTAAAAT GGATTAGAAA
    TACGTGAGAA CCAATTAGCA GAGTGCTCTC AGTCTGGGAG GAGGGTTTAT ACCGGGTTGC
    K
    AAGGGGCTTC CTCCTTGTCT AACAGTCGAA TGAAGACATT CTCAGCCTCC TAAACTTATT
    AGTAAACGCT GCAACAGGCT ATGAGTGCTC TGATCAACCC AGACCTCAAC CCATTTGAAA
    CATCTGCAGG GTCTGCGGGA AAGCTCCTGA CCCACAGCTA GCTCCAAAGG AGAAAGCATA
    CTTGATCTGC CTCGAAGGTT                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss349199109 MGP_WTSI_1_34542144 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T G T T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265613999 SNP T T T T T T T T T T T T T T T T T T T T T G T T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss349199109 MGP_WTSI_1_34542144 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:34524380 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4930568A12Rik RIKEN cDNA 4930568A12 gene within coordinates
Cpgi120 CpG island 120 273 bp proximal
Gm32566 predicted gene, 32566 within coordinates
Rr409037 regulatory region 409037 850 bp distal
Rr409038 regulatory region 409038 400 bp distal
Rr409039 regulatory region 409039 within coordinates
Rr409040 regulatory region 409040 624 bp proximal
Rr409041 regulatory region 409041 903 bp proximal
Tssr36 transcription start site region 36 13 bp upstream
Tssr11221 transcription start site region 11221 625 bp downstream
Tssr11222 transcription start site region 11222 649 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory