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rs265628146 SNP Detail
Summary
  • ID
    rs265628146
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr13:41759368 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCGGGCGGAC GCTGGGAGCC
    GACGACAGCC TGAGCTCCCG GGTGCCTAGG GCGGCGCGCG CGCGCGCGCG AGGAGCGGGG
    GGGAGGCAGT GCGCGTGCGC AGCCGCTCAC CCCCGGGGAG GCGGGGCCGA GGAGCGGACA
    CGCGCATGCG CGCGCCCCGG GGCGGTCGCG GGCGGAGGGG GCGGCTCCTC GAGTGTTGGC
    K
    ACCCAAAGGC CGAGCGGCAG GCGGGCGGCA GGTGCCGCGG CCGGGCGCCG CTGCCTCGTC
    GCGCGTCCCC GCGATGAGCC TCGTCTCGCG GCCTGCCCCT GCCGGCTGCC GCTCCGCGCG
    GGCCTCACGG CGTGACCCGG GCCTCGTGGC GTGGCGGGCC CCCGCGGCGC GACGCGGGCC
    CTGAGCGGGA GCGGCGGTCC                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57L/J
CAST/EiJ
CBA/J
CZECHII/EiJ
DBA/2J
FVB/NJ
JF1/MsJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss388394230 MGP_WTSI_13_41701261 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T G T G T T G T T T T T T T T T T T T T T G T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57L/J
CAST/EiJ
CBA/J
CZECHII/EiJ
DBA/2J
FVB/NJ
JF1/MsJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs265628146 SNP T T T T T T T T T T T T T G T G T T G T T T T T T T T T T T T T T G T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss388394230 MGP_WTSI_13_41701261 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:41759368 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi5501 CpG island 5501 within coordinates
Gm32184 predicted gene, 32184 136 bp upstream
Rr281294 regulatory region 281294 within coordinates
Tmem170b transmembrane protein 170B 15 bp upstream
Tssr119412 transcription start site region 119412 29 bp downstream
Tssr119413 transcription start site region 119413 within coordinates
Tssr119414 transcription start site region 119414 12 bp upstream
Tssr122210 transcription start site region 122210 391 bp upstream
Tssr122211 transcription start site region 122211 347 bp upstream
Tssr122212 transcription start site region 122212 517 bp downstream
Tssr122213 transcription start site region 122213 1879 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory