rs265636120 SNP Detail

Summary

• ID
  rs265636120
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117662591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTACTGA ACACCTCCAG
  GTCGTCCTCG TCCTCGTCCA GATCCAGCAC ATCGGCCTGC AGCAGGCTGC AGGAACCGCT
  GCCACTCGGG ATCGGGGCGC CGCCCCGCGG GCTCTCCCCG ACCGCCAGCT CCGAGGAGCC
  CGACGCCAGG CGCTCGCCGT CCATCCCGGC AGTGCGCGCC CAGCCGGCCG CCTCTGCCAG
  S
  CCGGCTCCCC CGCGCGCGCC CATTGGCTCC CGAGGCGCCC TGCGCCTCCC TGGCCAGCCC
  AGCTCCTGCC CCTCGGCCGT GCGCAGACGC GGAACTGCGG GAGCCCGCGG CGCCGGGCCG
  GGCCGGGGCG GGAGAGCGGT GGGGCCTGCC CAGCCACAAC CTGGCTCAGA TCTACAGCCC
  GACTTTTAAA TTCTGACTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359391005	MGP_WTSI_3_117571860	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265636120					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359391005	MGP_WTSI_3_117571860	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117662591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13747	CpG island 13747	within coordinates
Gm56798	predicted gene, 56798	75 bp upstream
Rr583874	regulatory region 583874	1648 bp distal
Rr583875	regulatory region 583875	within coordinates
Rr583876	regulatory region 583876	234 bp proximal
Rr583877	regulatory region 583877	248 bp proximal
Snx7	sorting nexin 7	6 bp upstream
Tssr31404	transcription start site region 31404	78 bp upstream
Tssr35382	transcription start site region 35382	21 bp upstream
Tssr35383	transcription start site region 35383	within coordinates