rs265638535 SNP Detail

Summary

• ID
  rs265638535
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69489628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGGTATA GCATTGGAAA
  TGTAAATGAG CTAAATACCT AATAAAAAAT GGGAAAAAAA ATTAAAGTTA GGCCAGGACT
  GGGGAGATGA CTCAGAGGTT AAGAATGCAC ACCGGTGTTA CAAAGTACCT GTGCTTCTTG
  CCCAGCACTC ATGTAAGACA GCTCACAAGT GCCCCTAACT CCTGTAACTG CAGCTCCAGG
  R
  GAGCCAAACC TCTGGCCTCC TCAGTCAGTG CACCCACGTA CACAAACCCA CACTCAGACG
  CACATGCAGA TACATCATTT CTTTTTTTTT TTTTAAATAA AAATTGAAGT TAGGGGCTGG
  CACACACTTG CAATCCCTGT ATTCAGGAAG GAAAGCTCAG AGGACTAGGA GTCCAGGCCA
  GCCGGCTTTG GCAATGAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787265	MGP_WTSI_11_69412304	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265638535					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787265	MGP_WTSI_11_69412304	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69489628 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	934 bp downstream
Gm72066	predicted gene, 72066	927 bp upstream
Rr386229	regulatory region 386229	605 bp upstream
Rr450033	regulatory region 450033	746 bp proximal
Rr450034	regulatory region 450034	787 bp proximal
Rr450035	regulatory region 450035	1239 bp proximal
Tssr3544	transcription start site region 3544	1893 bp downstream
Tssr102487	transcription start site region 102487	1211 bp upstream
Tssr108712	transcription start site region 108712	1205 bp downstream
Tssr108713	transcription start site region 108713	1350 bp downstream
Tssr108714	transcription start site region 108714	1432 bp downstream
Tssr108715	transcription start site region 108715	1445 bp downstream
Tssr108716	transcription start site region 108716	1757 bp downstream
Tssr108717	transcription start site region 108717	1782 bp downstream
Tssr108718	transcription start site region 108718	1841 bp downstream
Tssr108719	transcription start site region 108719	1852 bp downstream
Tssr108720	transcription start site region 108720	1856 bp downstream
Tssr108721	transcription start site region 108721	1870 bp downstream
Tssr108722	transcription start site region 108722	1951 bp downstream
Tssr108723	transcription start site region 108723	1979 bp downstream