rs265644584 SNP Detail

Summary

• ID
  rs265644584
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134421156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTTAAC ATGCATCAGA
  TCCGTGGTGT TGAGGGGGCA TATTCTACCA TTCCGATCTC ATTAGTACAG TCTCTCTCTA
  CGCAGAAATA TGCTTTAGTC GCTGGTTTAC AAACCATTCT TAAGTTTGAT CCCTTTTTTT
  GTTTGTTTGG TTTTTGTTTT TGTTTTTTTC AAGACAGGGT TTCTCTGTGT AGCCCTGGCT
  K
  TCCTGGAACT AACTCTGTAG ACCAGGCTGG CCTCGAACTC AGAAATTTGC CTGCCTCTGC
  CTCCCAAGTG CTGGGATTAA AGGCTGTGCC ACCATTGCCC AGCTTTAAAT TTGATCCTTT
  TCTAGTGTAC CCTGTGTCTA AAATCTTTCA TTCCTGACAA CCAAATGGTT AATTAAAATG
  ATACCTACGG GGCCTGGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351519785	MGP_WTSI_1_136389995	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265644584					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351519785	MGP_WTSI_1_136389995	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134421156 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	1078 bp proximal
Rabif	RAB interacting factor	1221 bp upstream
Rr396314	regulatory region 396314	1046 bp upstream
Rr418926	regulatory region 418926	1679 bp distal
Rr418927	regulatory region 418927	312 bp proximal
Rr418928	regulatory region 418928	740 bp proximal
Rr418929	regulatory region 418929	1312 bp proximal
Rr418930	regulatory region 418930	1753 bp proximal
Tssr8899	transcription start site region 8899	1210 bp upstream
Tssr8900	transcription start site region 8900	1318 bp upstream
Tssr8901	transcription start site region 8901	1568 bp upstream